FAQ
Had some packages fail install so I updated to today's R-beta release.
On updating packages the following packages still fail. sessionInfo
follows. Mark

Warning messages:
1: In install.packages(update[instlib == l, "Package"], l, contriburl =
contriburl, :
installation of package 'MANOR' had non-zero exit status
2: In install.packages(update[instlib == l, "Package"], l, contriburl =
contriburl, :
installation of package 'qvalue' had non-zero exit status
3: In install.packages(update[instlib == l, "Package"], l, contriburl =
contriburl, :
installation of package 'tkWidgets' had non-zero exit status
sessionInfo()
R version 2.6.0 beta (2007-09-18 r42895)
i686-pc-linux-gnu

locale:
LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C

attached base packages:
[1] tools stats graphics grDevices utils datasets methods
[8] base

other attached packages:
[1] limma_2.11.13 affy_1.15.9 preprocessCore_0.99.18
[4] affyio_1.5.11 Biobase_1.15.33 graph_1.15.20

loaded via a namespace (and not attached):
[1] cluster_1.11.8 rcompgen_0.1-15
--

---

Mark W. Kimpel MD ** Neuroinformatics ** Dept. of Psychiatry
Indiana University School of Medicine

15032 Hunter Court, Westfield, IN 46074

(317) 490-5129 Work, & Mobile & VoiceMail
(317) 663-0513 Home (no voice mail please)

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  • Martin Morgan at Sep 20, 2007 at 3:21 am
    Hi Mark --

    sessionInfo and the warning messages are not enough here. Try to
    install one of the failing packages and provide the complete
    transcript of the process.

    Consider sending this to the Bioconductor mailing lists (bioc-devel,
    in particular, since these packages are in the development branch).

    Martin

    Mark W Kimpel <mkimpel@iupui.edu> writes:
    Had some packages fail install so I updated to today's R-beta release.
    On updating packages the following packages still fail. sessionInfo
    follows. Mark

    Warning messages:
    1: In install.packages(update[instlib == l, "Package"], l, contriburl =
    contriburl, :
    installation of package 'MANOR' had non-zero exit status
    2: In install.packages(update[instlib == l, "Package"], l, contriburl =
    contriburl, :
    installation of package 'qvalue' had non-zero exit status
    3: In install.packages(update[instlib == l, "Package"], l, contriburl =
    contriburl, :
    installation of package 'tkWidgets' had non-zero exit status
    sessionInfo()
    R version 2.6.0 beta (2007-09-18 r42895)
    i686-pc-linux-gnu

    locale:
    LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C

    attached base packages:
    [1] tools stats graphics grDevices utils datasets methods
    [8] base

    other attached packages:
    [1] limma_2.11.13 affy_1.15.9 preprocessCore_0.99.18
    [4] affyio_1.5.11 Biobase_1.15.33 graph_1.15.20

    loaded via a namespace (and not attached):
    [1] cluster_1.11.8 rcompgen_0.1-15
    --

    ---

    Mark W. Kimpel MD ** Neuroinformatics ** Dept. of Psychiatry
    Indiana University School of Medicine

    15032 Hunter Court, Westfield, IN 46074

    (317) 490-5129 Work, & Mobile & VoiceMail
    (317) 663-0513 Home (no voice mail please)

    ______________________________________________
    R-devel at r-project.org mailing list
    https://stat.ethz.ch/mailman/listinfo/r-devel
    --
    Martin Morgan
    Bioconductor / Computational Biology
    http://bioconductor.org

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