FAQ

[IPython-dev] try jsplugins d3graph

W Gong
Nov 30, 2012 at 3:29 pm
Hi,
I followed the instruction from jsplugins > d3graph > README.md

d3graph.py : copied to .ipython\extensions

d3graph.js and d3graph.css : copied
to .ipython\profile_default\static\jsplugins\d3graph

(Note: I am on window, using EPD and
ipython-0.13.2.dev-py2.7.egg)

run ipython notebook --pylab inline

open Visualizing Graphs with d3.ipynb

each cell was executed, but the graph did not show up.

But I can plot graph with:

pos=nx.spring_layout(G,iterations=100)
plt.subplot(221)
nx.draw(G,pos,font_size=8)


A screenshot is available at
http://dl.dropbox.com/u/54552252/d3graph_display-not-showing.jpg

Let me what is missing

Thanks,
Wen
reply

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5 responses

  • Cyrille Rossant at Nov 30, 2012 at 3:38 pm ⇧
    2012/11/30 W Gong <wen...@...com>
    Hi,
    I followed the instruction from jsplugins > d3graph > README.md

    d3graph.py : copied to .ipython\extensions

    d3graph.js and d3graph.css : copied
    to .ipython\profile_default\static\jsplugins\d3graph

    (Note: I am on window, using EPD and
    ipython-0.13.2.dev-py2.7.egg)

    run ipython notebook --pylab inline

    open Visualizing Graphs with d3.ipynb

    each cell was executed, but the graph did not show up.

    But I can plot graph with:

    pos=nx.spring_layout(G,iterations=100)
    plt.subplot(221)
    nx.draw(G,pos,font_size=8)


    A screenshot is available at
    http://dl.dropbox.com/u/54552252/d3graph_display-not-showing.jpg

    Let me what is missing
    Hi,

    Are you using this branch for IPython?
    https://github.com/ellisonbg/ipython/tree/jsonhandlers

    Cyrille
  • W Gong at Nov 30, 2012 at 4:58 pm ⇧
    yes,
    d3grpah now works,

    But PyTutor does not:
    after %%pytutor, shall I expect the callstack to display? nothing is
    display for me

    Did I miss any pre-requisite? Any suggestion?

    Thanks,
    Wen

    On Fri, Nov 30, 2012 at 10:50 AM, W Gong wrote:

    Hi, Cyrille,
    I am not aware of this branch, but will try it out.

    Thanks for your quick response

    Wen

    On Fri, Nov 30, 2012 at 10:38 AM, Cyrille Rossant <
    cyr...@...com> wrote:
    2012/11/30 W Gong <wen...@...com>
    Hi,
    I followed the instruction from jsplugins > d3graph > README.md

    d3graph.py : copied to .ipython\extensions

    d3graph.js and d3graph.css : copied
    to .ipython\profile_default\static\jsplugins\d3graph

    (Note: I am on window, using EPD and
    ipython-0.13.2.dev-py2.7.egg)

    run ipython notebook --pylab inline

    open Visualizing Graphs with d3.ipynb

    each cell was executed, but the graph did not show up.

    But I can plot graph with:

    pos=nx.spring_layout(G,iterations=100)
    plt.subplot(221)
    nx.draw(G,pos,font_size=8)


    A screenshot is available at
    http://dl.dropbox.com/u/54552252/d3graph_display-not-showing.jpg

    Let me what is missing
    Hi,

    Are you using this branch for IPython?
    https://github.com/ellisonbg/ipython/tree/jsonhandlers

    Cyrille



    _______________________________________________
    IPython-dev mailing list
    ipy...@...org
    http://mail.scipy.org/mailman/listinfo/ipython-dev

    --

    Thanks,

    - Wen




    --

    Thanks,

    - Wen
  • Brian Granger at Nov 30, 2012 at 5:10 pm ⇧
    I think there is a problem with the pytutor one right now, as Fernando
    ran into something similar. PRs welcome :)

    Brian
    On Fri, Nov 30, 2012 at 8:58 AM, W Gong wrote:
    yes,
    d3grpah now works,

    But PyTutor does not:
    after %%pytutor, shall I expect the callstack to display? nothing is display
    for me

    Did I miss any pre-requisite? Any suggestion?

    Thanks,
    Wen

    On Fri, Nov 30, 2012 at 10:50 AM, W Gong wrote:

    Hi, Cyrille,
    I am not aware of this branch, but will try it out.

    Thanks for your quick response

    Wen

    On Fri, Nov 30, 2012 at 10:38 AM, Cyrille Rossant
    wrote:

    2012/11/30 W Gong <wen...@...com>
    Hi,
    I followed the instruction from jsplugins > d3graph > README.md

    d3graph.py : copied to .ipython\extensions

    d3graph.js and d3graph.css : copied to
    .ipython\profile_default\static\jsplugins\d3graph

    (Note: I am on window, using EPD and
    ipython-0.13.2.dev-py2.7.egg)

    run ipython notebook --pylab inline

    open Visualizing Graphs with d3.ipynb

    each cell was executed, but the graph did not show up.

    But I can plot graph with:

    pos=nx.spring_layout(G,iterations=100)
    plt.subplot(221)
    nx.draw(G,pos,font_size=8)


    A screenshot is available at
    http://dl.dropbox.com/u/54552252/d3graph_display-not-showing.jpg

    Let me what is missing

    Hi,

    Are you using this branch for IPython?
    https://github.com/ellisonbg/ipython/tree/jsonhandlers

    Cyrille



    _______________________________________________
    IPython-dev mailing list
    ipy...@...org
    http://mail.scipy.org/mailman/listinfo/ipython-dev


    --

    Thanks,

    - Wen




    --

    Thanks,

    - Wen





    _______________________________________________
    IPython-dev mailing list
    ipy...@...org
    http://mail.scipy.org/mailman/listinfo/ipython-dev


    --
    Brian E. Granger
    Cal Poly State University, San Luis Obispo
    bgr...@...edu and ell...@...com
    _______________________________________________
    IPython-dev mailing list
    ipy...@...org
    http://mail.scipy.org/mailman/listinfo/ipython-dev
  • W Gong at Nov 30, 2012 at 6:59 pm ⇧
    Brian

    from pytutor.js, I see the following commented out:

    /* To import, put this at the top of your HTML page:

    <!-- requirements for pytutor.js -->
    <script type="text/javascript" src="js/d3.v2.min.js"></script>
    <script type="text/javascript" src="js/jquery-1.8.2.min.js"></script>
    <script type="text/javascript" src="js/jquery.ba-bbq.min.js"></script> <!--
    for handling back button and URL hashes -->
    <script type="text/javascript" src="js/jquery.jsPlumb-1.3.10-all-min.js
    "></script> <!-- for rendering SVG connectors

    DO NOT UPGRADE ABOVE 1.3.10 OR ELSE BREAKAGE WILL OCCUR -->
    <script type="text/javascript"
    src="js/jquery-ui-1.8.24.custom.min.js"></script> <!-- for sliders and
    other UI elements -->
    <link type="text/css" href="css/ui-lightness/jquery-ui-1.8.24.custom.css"
    rel="stylesheet" />

    <!-- for annotation bubbles -->
    <script type="text/javascript" src="js/jquery.qtip.min.js"></script>
    <link type="text/css" href="css/jquery.qtip.css" rel="stylesheet" />

    <script type="text/javascript" src="js/pytutor.js"></script>
    <link rel="stylesheet" href="css/pytutor.css"/>

    */

    I don't see
    jquery.ba-bbq.min.js
    jquery-ui-1.8.24.custom.min.js
    jquery.qtip.min.js

    are loaded anyway

    Wen
    On Fri, Nov 30, 2012 at 12:10 PM, Brian Granger wrote:

    I think there is a problem with the pytutor one right now, as Fernando
    ran into something similar. PRs welcome :)

    Brian
    On Fri, Nov 30, 2012 at 8:58 AM, W Gong wrote:
    yes,
    d3grpah now works,

    But PyTutor does not:
    after %%pytutor, shall I expect the callstack to display? nothing is display
    for me

    Did I miss any pre-requisite? Any suggestion?

    Thanks,
    Wen

    On Fri, Nov 30, 2012 at 10:50 AM, W Gong wrote:

    Hi, Cyrille,
    I am not aware of this branch, but will try it out.

    Thanks for your quick response

    Wen

    On Fri, Nov 30, 2012 at 10:38 AM, Cyrille Rossant
    wrote:

    2012/11/30 W Gong <wen...@...com>
    Hi,
    I followed the instruction from jsplugins > d3graph > README.md

    d3graph.py : copied to .ipython\extensions

    d3graph.js and d3graph.css : copied to
    .ipython\profile_default\static\jsplugins\d3graph

    (Note: I am on window, using EPD and
    ipython-0.13.2.dev-py2.7.egg)

    run ipython notebook --pylab inline

    open Visualizing Graphs with d3.ipynb

    each cell was executed, but the graph did not show up.

    But I can plot graph with:

    pos=nx.spring_layout(G,iterations=100)
    plt.subplot(221)
    nx.draw(G,pos,font_size=8)


    A screenshot is available at
    http://dl.dropbox.com/u/54552252/d3graph_display-not-showing.jpg

    Let me what is missing

    Hi,

    Are you using this branch for IPython?
    https://github.com/ellisonbg/ipython/tree/jsonhandlers

    Cyrille



    _______________________________________________
    IPython-dev mailing list
    ipy...@...org
    http://mail.scipy.org/mailman/listinfo/ipython-dev


    --

    Thanks,

    - Wen




    --

    Thanks,

    - Wen





    _______________________________________________
    IPython-dev mailing list
    ipy...@...org
    http://mail.scipy.org/mailman/listinfo/ipython-dev


    --
    Brian E. Granger
    Cal Poly State University, San Luis Obispo
    bgr...@...edu and ell...@...com
    _______________________________________________
    IPython-dev mailing list
    ipy...@...org
    http://mail.scipy.org/mailman/listinfo/ipython-dev


    --

    Thanks,

    - Wen
  • Brian Granger at Nov 30, 2012 at 7:56 pm ⇧
    Thanks,

    I will have a look at this when I get back to working on the plugin stuff.

    Brian
    On Fri, Nov 30, 2012 at 10:59 AM, W Gong wrote:
    Brian

    from pytutor.js, I see the following commented out:

    /* To import, put this at the top of your HTML page:

    <!-- requirements for pytutor.js -->
    <script type="text/javascript" src="js/d3.v2.min.js"></script>
    <script type="text/javascript" src="js/jquery-1.8.2.min.js"></script>
    <script type="text/javascript" src="js/jquery.ba-bbq.min.js"></script> <!--
    for handling back button and URL hashes -->
    <script type="text/javascript" src="js/jquery.jsPlumb-1.3.10-all-min.js
    "></script> <!-- for rendering SVG connectors

    DO NOT UPGRADE ABOVE 1.3.10 OR ELSE BREAKAGE WILL OCCUR -->
    <script type="text/javascript"
    src="js/jquery-ui-1.8.24.custom.min.js"></script> <!-- for sliders and other
    UI elements -->
    <link type="text/css" href="css/ui-lightness/jquery-ui-1.8.24.custom.css"
    rel="stylesheet" />

    <!-- for annotation bubbles -->
    <script type="text/javascript" src="js/jquery.qtip.min.js"></script>
    <link type="text/css" href="css/jquery.qtip.css" rel="stylesheet" />

    <script type="text/javascript" src="js/pytutor.js"></script>
    <link rel="stylesheet" href="css/pytutor.css"/>

    */

    I don't see
    jquery.ba-bbq.min.js
    jquery-ui-1.8.24.custom.min.js
    jquery.qtip.min.js

    are loaded anyway

    Wen
    On Fri, Nov 30, 2012 at 12:10 PM, Brian Granger wrote:

    I think there is a problem with the pytutor one right now, as Fernando
    ran into something similar. PRs welcome :)

    Brian
    On Fri, Nov 30, 2012 at 8:58 AM, W Gong wrote:
    yes,
    d3grpah now works,

    But PyTutor does not:
    after %%pytutor, shall I expect the callstack to display? nothing is
    display
    for me

    Did I miss any pre-requisite? Any suggestion?

    Thanks,
    Wen

    On Fri, Nov 30, 2012 at 10:50 AM, W Gong wrote:

    Hi, Cyrille,
    I am not aware of this branch, but will try it out.

    Thanks for your quick response

    Wen

    On Fri, Nov 30, 2012 at 10:38 AM, Cyrille Rossant
    wrote:

    2012/11/30 W Gong <wen...@...com>
    Hi,
    I followed the instruction from jsplugins > d3graph > README.md

    d3graph.py : copied to .ipython\extensions

    d3graph.js and d3graph.css : copied to
    .ipython\profile_default\static\jsplugins\d3graph

    (Note: I am on window, using EPD and
    ipython-0.13.2.dev-py2.7.egg)

    run ipython notebook --pylab inline

    open Visualizing Graphs with d3.ipynb

    each cell was executed, but the graph did not show up.

    But I can plot graph with:

    pos=nx.spring_layout(G,iterations=100)
    plt.subplot(221)
    nx.draw(G,pos,font_size=8)


    A screenshot is available at
    http://dl.dropbox.com/u/54552252/d3graph_display-not-showing.jpg

    Let me what is missing

    Hi,

    Are you using this branch for IPython?
    https://github.com/ellisonbg/ipython/tree/jsonhandlers

    Cyrille



    _______________________________________________
    IPython-dev mailing list
    ipy...@...org
    http://mail.scipy.org/mailman/listinfo/ipython-dev


    --

    Thanks,

    - Wen




    --

    Thanks,

    - Wen





    _______________________________________________
    IPython-dev mailing list
    ipy...@...org
    http://mail.scipy.org/mailman/listinfo/ipython-dev


    --
    Brian E. Granger
    Cal Poly State University, San Luis Obispo
    bgr...@...edu and ell...@...com
    _______________________________________________
    IPython-dev mailing list
    ipy...@...org
    http://mail.scipy.org/mailman/listinfo/ipython-dev



    --

    Thanks,

    - Wen





    _______________________________________________
    IPython-dev mailing list
    ipy...@...org
    http://mail.scipy.org/mailman/listinfo/ipython-dev


    --
    Brian E. Granger
    Cal Poly State University, San Luis Obispo
    bgr...@...edu and ell...@...com
    _______________________________________________
    IPython-dev mailing list
    ipy...@...org
    http://mail.scipy.org/mailman/listinfo/ipython-dev

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