Grokbase Groups R r-help October 2001
FAQ
Hello,


I had (and still have) to deal with SGIs and came across the similar
error message. I remember going through by setting MAKE=gmake in the
config.site file and by replacing the 'make ; make test; make install' on
the command line by 'gmake; gmake test; gmake install'
(rem: If I remember well, on a SGI the test bit do not go too good... this
is (was ?) a reported bug).


Hopin' it helps,



Laurent







Laurent Gautier CBS, Building 208, DTU
PhD. Student D-2800 Lyngby,Denmark
tel: +45 45 25 24 85 http://www.cbs.dtu.dk/laurent
On Tue, 23 Oct 2001, Greg Jefferis wrote:

Hi,

I wondered if anyone had shed some light on this as I have come on a similar
problem on another Origin. The configure output looks like this
R is now configured for mips-sgi-irix6.5

Source directory: .
Installation directory: /usr/local
C compiler: gcc -g -O2
C++ compiler: c++ -g -O2
FORTRAN compiler: g77 -g -O2

X11 support: yes
Gnome support: no
Tcl/Tk support: yes

R profiling support: yes
R as a shared library: no
and the make output looks like this around the failure point

gcc -I. -I../../../src/include -I../../../src/include
-I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c nanohttp.c -o
nanohttp.lo
gcc -I. -I../../../src/include -I../../../src/include
-I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c sock.c -o sock.lo
gcc -I. -I../../../src/include -I../../../src/include
-I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c sockconn.c -o
sockconn.lo
gcc -shared -o internet.so Rsock.lo internet.lo nanoftp.lo
nanohttp.lo sock.lo sockconn.lo
making Lapack.d from Lapack.c
gcc -I. -I../../../src/include -I../../../src/include
-I/usr/local/include -DHAVE_CONFIG_H -fPIC -g -O2 -c Lapack.c -o Lapack.lo
g77 -fPIC -g -O2 -c double.f -o double.lo
g77 -fPIC -g -O2 -c cmplx.f -o cmplx.lo
don't know how to make # (bu42).
*** Error code 1 (bu21)
*** Error code 1 (bu21)
*** Error code 1 (bu21)
*** Error code 1 (bu21)


Many thanks for any hints,

Greg Jefferis

On 10/23/01 06:39, "Duval, Manuel" wrote:

Dear R contributors,


I recently dowloaded the R-1.3.1 on my SGi Origin 200 run by Irix6.5.
In order to instal it, I launched the command shown below:

env MAKE=gmake ./configure

The output was as follow::

R is now configured for mips-sgi-irix6.5

Source directory: .
Installation directory: /usr/local
C compiler: cc -OPT:IEEE_NaN_inf=ON -g
C++ compiler: CC -OPT:IEEE_NaN_inf=ON -g
FORTRAN compiler: f77 -OPT:IEEE_NaN_inf=ON -g

X11 support: yes
Gnome support: no
Tcl/Tk support: no

R profiling support: yes
R as a shared library: no

Then, when I test the installatuion by invoking make check , I got the
following error message:

[duval at svsgi4]/shome/d/duvalm/R-1.2.3/tests> make test-All
don't know how to make ../../library/base/R/base (bu42).
*** Error code 1 (bu21)
*** Error code 1 (bu21)
*** Error code 1 (bu21)

Any clue to bypass this problem will be greatly appreciated.

Sincerely

Manuel
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__________________________________________________________________________
Greg Jefferis, Lab Address: Liqun Luo, Herrin 144
Neurosciences PhD Programme & e-mail: jefferis at stanford.edu
Dept Biological Sciences, Lab: (650) 725 5809
Gilbert Biology Building, Fax: (650) 723 0589
371 Serra Mall,
Stanford, CA 94305-5020. Home: (650) 497 1135

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