FAQ

This is my "straw poll" question:

Do you spend a "significant" amount of time actually optimizing your
Python applications? (Significant is here defined as "more than five
percent of your time", which is for example two hours a week in a
40-hour work week.)
Yes and No :) I find that optimizing algorithms is a lot more
beneficial than optimizing code. Let me give a small example. I have
written a chemoinformatics engine (http://frowns.sourceforge.net/) and
one of it's features is substructure searching. That is finding if a
graph is embedded in another graph. This is an NP-Complete problem. A
company recently compared their technique in terms of speed and
correctness to frowns. According to them, frowns was 99% percent
correct but 1000x slower. (Why they were marketing their system which
was built over 5+ man years against mine which was built over 3 months I
never will understand)

Now, 1000x is a *lot* slower. However, when used in practice in a
database setting, my system has a quick mechanism that can reject false
matches very quickly. This is standard practice for chemistry databases
by the way. All of a sudden the 1000x difference becomes almost
meaningless. For a given search across 300000+ compounds, my system
takes 1.2 seconds and their's takes 25 minutes. Using my prefiltering
scheme their system takes 0.7 seconds. Now my code didn't change at
all, only the way it was used changed.

I could, of course, generate an example that takes me much longer but
the average case is a whole lot better. My system is free though, so my
users tend not to mind (or quite honestly, expect) as much :)

Brian

Search Discussions

Discussion Posts

Previous

Follow ups

Related Discussions

People

Translate

site design / logo © 2018 Grokbase